I was studying this very concept for my board exams just over a year ago, at the same time my son was just a wee infant. The answer lies in the epiglottis. Here is an illustration of the epiglottis of an infant:
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I was recently reminded of this concept during our summer break at my parent's house when Jordan was drinking from a sippy cup and started coughing. I looked at him and asked if he got some down the wrong pipe and then realized that this had never happened to him before. I realized my little boy is growing up - his epiglottis is no longer touching his soft palate when he drinks! He'll just have to alternate between drinking and breathing just like the rest of us now. I think this is a milestone in toddlers lives that most parents are unaware of.
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